India: First Delta/BA.2 recombinant recorded in Karnataka
The first ever Deltacron recombinant combining Delta and Omicron BA.2 has been identified in a sequence from Karnataka, India. Deltacron recombinants identified to date have combined Delta with Omicron BA.1 or BA.1.1.
The recombinant hasn’t been formally named yet as there is only a single example, but, as the scientist who spotted it, Cornelius Roemer, says, it’s “Potentially worth keeping an eye on”
“I wouldn’t open issues for singlets, but this one is interesting because it’s the first possible Delta-BA.2 recombinant I’m aware of. It looks clean to me, with a single breakpoint at the start of S1.”
hCoV-19/India/KA-CBR-1402CTD094/2022 EPI_ISL_10306555 2022-02-11
Potentially worth keeping an eye on
From Cornelius Roemer at Gisaid – issue #484
Things seem fairly quiet for Covid in Karnataka at the moment:
2-04-2022 HMB English
Meanwhile, BA.2 activity is off the charts:
New #PANGO designations – BA.2.*
BA.2.4Alias of B.1.1.529.2.4, #Singapore lineage
BA.2.5Alias of B.1.1.529.2.5, lineage in #Portugal and other countries
BA.2.6Alias of B.1.1.529.2.6, lineage in #France and other countries
BA.2.7Alias of B.1.1.529.2.7, #USA lineage pic.twitter.com/s7bLwUiULl
— Raj Rajnarayanan (@RajlabN) March 26, 2022
Recombination: Details on XD, XE and XF recombinants by Tom Peacock