Preprint: C.37 Lambda variant exhibits higher infectivity and immune resistance

“In this study, we demonstrated that three mutations, the RSYLTPGD246-253N, L452Q and F490S mutations, respectively confer resistance to the vaccine-induced antiviral immunity. Additionally, the T76I and L452Q mutations contribute to enhanced viral infectivity. Our data suggest that there are at least two virological features on the Lambda variant: increasing viral infectivity (by the T76I and L452Q mutations) and exhibiting resistance to antiviral immunity (by the RSYLTPGD246-253N, L452Q and F490S mutations).”

BiorXiv preprint: SARS-CoV-2 Lambda variant exhibits higher infectivity and immune resistance

 

 

Image by mailanmaik from Pixabay

Preprint: Infectivity and immune escape of the new coronavirus variant of interest C.37 Lambda

“We also observed that the spike protein of the Lambda variant presented increased infectivity when compared with the spike protein of the Alpha and Gamma variants, both of them with reported increased infectivity and transmissibility. Together, our data show for the first time that mutations present in the spike protein of the Lambda variant confer escape to neutralizing antibodies and increased infectivity.”

“The evidence presented here reinforces the idea that massive vaccination campaigns in countries with high SARS-CoV-2 circulation rates must be accompanied by strict genomic surveillance aimed to rapidly identify new viral isolates carrying spike mutations as well as studies aimed to analyze the impact of these mutations in immune escape and vaccines breakthrough.”

Medrxiv preprint : Infectivity and immune escape of the new SARS-CoV-2 variant of interest Lambda

 

Preprint: The emergence of Sars-CoV-2 #coronavirus variant Lambda C.37 in South America

 

 

Photo by Paula Porto on Unsplash

Preprint: The emergence of Sars-CoV-2 coronavirus variant Lambda C.37 in South America

We report the emergence of a novel lineage of SARS-CoV-2 in South America, termed C.37. It presents seven nonsynonymous mutations in the Spike gene (Δ247-253, G75V, T76I, L452Q, F490S, T859N) and a deletion in the ORF1a gene (Δ3675-3677) also found in variants of concern (VOCs) Alpha, Beta, and Gamma. Initially reported in Lima, Peru, in late December 2020, it now accounts for 97% of Peruvian public genomes in April 2021. It is expanding in Chile and Argentina, and there is evidence of onward transmission in Colombia, Ecuador, Mexico, the USA, Germany, and Israel. On June 15, 2021, the World Health Organization designated C.37 as Variant of Interest (VOI) Lambda.

Full Medrxiv preprint: The Emergence of SARS-CoV-2 Variant Lambda (C.37) in South America

 

Preprint: Infectivity and immune escape of the new #coronavirus variant of interest C.37 Lambda

 

Peru: C.37 #coronavirus variant named Lambda by WHO

 

 

Image by Joaquín Enríquez from Pixabay

Peru: C.37 #coronavirus variant named Lambda by WHO

The World Health Organization (WHO) said Wednesday that the coronavirus variant of COVID-19, commonly known as C.37, has been named Lambda. Lambda has been identified in 29 countries, most  notably in South America where it is believed to have originated.

First identified in Peru, the Lambda lineage was classified as a global Variant of Interest on Monday due to an “elevated prevalence” in South America, the WHO said in its weekly update.

Lambda has been rampant in Peru where 81 percent of COVID-19 cases since April 2021 were associated with this variant, authorities reported.

In Chile, it was detected in 32 percent of all submitted sequences in the last 60 days, and only outclassed by the Gamma (P.1) variant which was first identified in Brazil. Other countries such as Argentina and Ecuador have also reported elevated prevalence of the new variant.

The WHO reported that the Lambda lineage carries mutations that might increase transmissibility or strengthen the virus’s resistance to antibodies.

However, evidence is too limited for the moment, the Geneva-based organization said, and more studies are required to understand better the Lambda variant.

Xinhuanet.com report

 

** Our opinion: At the moment, the Sars-CoV-2 infection numbers in South America seem to be declining after peaking in June 2021. The Delta variant seems to be more of a threat internationally when you compare Latin America infection figures with the UK figures for example **

 

Lineage prevalence in Peru:

 

Charts courtesy of Outbreak.info and OurworldinData.org

 

Preprint: The emergence of Sars-CoV-2 #coronavirus variant Lambda C.37 in South America

 

Chile: Santiago goes back into lockdown despite 60% #coronavirus vaccination rate

As of the early hours of this Saturday, 12th June 2021, Santiago de Chile has once again entered quarantine. The entire region begins with the mobility restriction measure when 57.8% of the country’s target population has completed their covid-19 vaccination schedule, but ICUs are on the brink of collapse.

According to the latest figures provided by the Undersecretary of Health, Paula Daza, the occupation of critical beds reaches 96% nationwide. But the vast majority of seriously ill patients are not immunized and there is a worrying decrease in the age of patients admitted to critical beds. Patients under 50 years of age in ICUs have tripled compared to the worst moment of last year, according to ICOVID, an initiative led by the University of Chile, the Pontificia Universidad Católica de Chile and the University of Concepción based on official data . The deaths reach 38,685, between confirmed and suspected.

El Pais report (in Spanish)

 

 

 

Lineage chart courtesy of Outbreak.info

Daily cases chart courtesy of OurworldinData.org

 

Image by javier alamo from Pixabay

Sweden: so much for Herd Immunity and Light Touch pandemic policies

“Instead of following evolving evidence, the [Swedish] FHM has doubled down and defended its approach without reconsidering the assumptions on which the failed national approach is based. It has downplayed the roles of asymptomatic spread, aerosol transmission, children as potential source of infection, and the use of face masks. It has maintained an approach that mainly builds on recommendations to take voluntary actions, guided (in our view) more by public opinion than by sound public health policy. “

Lancet article

 

If a picture is worth a thousand words, how much is one simple graph like this worth?

Graph courtesy of OurWorldinData.org

China: Our vaccines “don’t have very high protection rates,” says the director of Chinese CCDC

China’s top disease control official says the effectiveness of Chinese vaccines is low and the government is considering mixing them to give them a boost.  Chinese vaccines “don’t have very high protection rates,” said the director of the China Centers for Disease Control, Gao Fu, at a conference Saturday in the southwestern city of Chengdu.

Beijing has distributed hundreds of millions of doses in other countries while also trying to promote doubt about the effectiveness of Western vaccines.

“It’s now under formal consideration whether we should use different vaccines from different technical lines for the immunization process,” Gao said.

The effectiveness rate of a coronavirus vaccine from Sinovac, a Chinese developer, at preventing symptomatic infections has been found to be as low as 50.4% by researchers in Brazil. By comparison, the vaccine made by Pfizer has been found to be 97% effective.

Mainichi.jp report

 

Image by Willfried Wende from Pixabay
 

Sinovac #coronavirus vaccine – 27.7% effective within the first two weeks, 56.5% effective two weeks after the second dose

The study by the University of Chile found inoculation to be 56.5 percent effective in protecting recipients two weeks after the second dose, and 27.7 percent effective within the first two weeks.

But for a single dose, efficacy in the 28 days between the first and second dose was only three percent — on par with the margin of error in such studies, it said.

ABS-CBN.com report

 

 Image by Victor Millan from Pixabay

Chile heads back into #coronavirus lockdown despite massive vaccination campaign with Sinovac vaccine

Chile’s big coronavirus vaccine bet on China’s Sinovac shots. Chile hopes to reach herd immunity by the middle of the year and is nearly halfway to vaccinating its entire population. The Chinese made Sinovac vaccine has played a major part in the campaign, despite not releasing final phase data.

“This Monday the most restrictive measures to stop contagions begin to take effect: curfew at 9 p.m. and border closures

On this day, the borders will be closed for at least 30 days, and the curfew will begin at 9:00 p.m., extending until 5 a.m. There will also be new limitations to essential activities, where by essential good will be understood those essential goods for subsistence, telework, real estate security, distance education.

LaNacion.cl report

 

 

 

Graph courtesy of Ourworldindata.org

 

 

Chile goes into full #coronavirus lockdown despite world leading vaccination rates

Chile is a world leader in its coronavirus vaccination program and has already given at least one dose to almost a third of its population. By Thursday more than six million people had been given a single dose and 3.1 million both doses, including most over-70s. And yet that same day, the government put more than 80 percent of the country’s 19 million people in lockdown.

 

Vaccination Graph courtesy of Statista.com

Infections chart courtesy of Ourworldindata.org

AstraZeneca’s U.S. trial shows #coronavirus vaccine is 79% effective

Preliminary results from a study examining the efficacy of the Oxford-AstraZeneca coronavirus vaccine indicate it is significantly effective at preventing severe illness from COVID-19.

Results of the trial, which involved more than 32,000 volunteers, showed two doses of the vaccine administered four weeks apart had an efficacy of 79% at preventing symptoms of COVID-19. In participants aged 65 years and over, vaccine efficacy could be as high as 80%, AstraZeneca announced early Monday. It had an efficacy of 100% at preventing severe disease and hospitalization.

NPR.org report

Image by hakan german from Pixabay

Chile vaccinates nearly a quarter of its population against #coronavirus in a month, yet its infection rate is spiralling

Chile has begun administering second doses of Covid-19 vaccines as it presses ahead with an impressive vaccination campaign that has seen the Latin American nation become one of the fastest in the world.

Thanks to a strong public health network and a long history of effective immunisation campaigns, the government has been able to offer free jabs to almost one-quarter of its 19-million strong population in just over a month.

Daily Telegraph article

Daily case graph & data courtesy of Worldometers.com

 

Image by Simon from Pixabay