Tag: lineage
A SARS-CoV-2 coronavirus lineage A variant (A.23.1) with altered spike has emerged and is dominating the current Uganda epidemic
February 2021: We report here newly emerging A sub-lineages, A.23 and A.23.1, encoding replacements in the spike protein, nsp6, ORF8 and ORF9, with A.23.1 the major virus lineage now observed in Kampala. More...
FIN-796H coronavirus variant is NOT unique to Finland – has also been found in Nigeria and the UK
The Finnish coronavirus variant FIN-796H, discovered in February, is not unique to Finland, it has also been found in other parts of the world. More...
Colombia: novel highly divergent coronavirus SARS-CoV-2 lineage with the Spike substitutions L249S and E484K, assigned to the B.1.111 lineage
Here we report a novel and highly divergent lineage with 21 characteristic mutations, including 10 non-synonymous, 8 synonymous and 3 mutations in non-coding regions (5’and 3’ UTR and intergenic region). More...
Recombinant SARS-CoV-2 coronavirus genomes involving lineage B.1.1.7 in the UK
A survey of SARS-CoV-2 genome sequences from the UK has detected a number of variants that had been assigned to the B.1.1.7 lineage but which do not contain the full set of B.1.1.7 ‘lineage defining’ mutations. More...
SARS-CoV-2 variant of interest with mutation E484K was identified within lineage B.1.1.33 circulating in Brazil
We report the identification of a new SARS-CoV-2 VOI within lineage B.1.1.33 that also harbors mutation S:E484K and was detected in Brazil between November 2020 and February 2021. More...
New coronavirus variant under investigation in the UK, B.1.324.1, has key E484K and N501Y mutations
A new variant identified in the UK has been designated a Variant Under Investigation (VUI) by Public Health England. More...
More E484K, B1128 coronavirus co-infections reported in Brazil
B.1.1.28 (E484K) is able to establish successful coinfection events co-occurring simultaneously with different lineages of SARS-CoV-2. More...
Second case of variant Fin-796H confirmed in Finland. Four more Fin796H infections likely
Vita Laboratories and the University of Helsinki report that the variant Fin-796H has now been found in another patient. More...
Genomics and epidemiology of a novel SARS-CoV-2 lineage in Manaus, Brazil P1 coronavirus
Through genome sequencing of viruses sampled in Manaus between November 2020 and January 2021, we identified the emergence and circulation of a novel SARS-CoV-2 variant of concern, lineage P.1, that acquired 17 mutations, including a trio in the spike protein (K417T, E484K and N501Y) associated with increased binding to the human ACE2 receptor. More...
Recombinant coronavirus in Norway combines UK, South Africa and Brazil variants
A multivariant of the British, South African, and Brazilian corona variant has been detected in a sample taken from a person who came to Trondheim from abroad. More...